1HQ8 Apoptosis date Dec 14, 2000
title Crystal Structure Of The Murine Nk Cell-Activating Receptor Nkg2d At 1.95 A
authors D.W.Wolan, L.Teyton, M.G.Rudolph, B.Villmow, S.Bauer, D.H.Busch, I.A.Wilson
compound source
Molecule: Nkg2-D
Chain: A
Fragment: Extracellular Domain
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 21 21 21
R_factor 0.215 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.860 85.190 87.580 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
related structures by homologous chain: 1MPU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of the murine NK cell-activating receptor NKG2D at 1.95 A., Wolan DW, Teyton L, Rudolph MG, Villmow B, Bauer S, Busch DH, Wilson IA, Nat Immunol 2001 Mar;2(3):248-54. PMID:11224525
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1hq8.pdb1.gz) 43 Kb
  • CSU: Contacts of Structural Units for 1HQ8
  • Likely Quarternary Molecular Structure file(s) for 1HQ8
  • Structure Factors (181 Kb)
  • Retrieve 1HQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HQ8 from S2C, [Save to disk]
  • Re-refined 1hq8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HQ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HQ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hq8a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hq8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hq8_A] [1hq8]
  • SWISS-PROT database: [O54709]
  • Domain organization of [NKG2D_MOUSE] by SWISSPFAM
  • Domain found in 1HQ8: [CLECT ] by SMART
  • Other resources with information on 1HQ8
  • Community annotation for 1HQ8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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