1HQL Sugar Binding Protein date Dec 18, 2000
title The Xenograft Antigen In Complex With The B4 Isolectin Of Gr Simplicifolia Lectin-1
authors W.Tempel, L.A.Lipscomb, J.P.Rose, R.J.Woods
compound source
Molecule: Lectin
Chain: A, B
 Organism_scientific: Griffonia Simplicifolia
Organism_taxid: 3850
Organ: Seed
symmetry Space Group: P 21 21 2
R_factor 0.233 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
111.210 51.280 77.110 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CA, GLA, MBG, MN, NAG enzyme
related structures by homologous chain: 1GNZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe xenograft antigen bound to Griffonia simplicifolia lectin 1-B(4). X-ray crystal structure of the complex and molecular dynamics characterization of the binding site., Tempel W, Tschampel S, Woods RJ, J Biol Chem 2002 Feb 22;277(8):6615-21. Epub 2001 Nov 19. PMID:11714721
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1hql.pdb1.gz) 154 Kb
  • LPC: Ligand-Protein Contacts for 1HQL
  • CSU: Contacts of Structural Units for 1HQL
  • Likely Quarternary Molecular Structure file(s) for 1HQL
  • Structure Factors (196 Kb)
  • Retrieve 1HQL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HQL from S2C, [Save to disk]
  • Re-refined 1hql structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HQL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HQL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HQL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hqla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hqlb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hql_A] [1hql] [1hql_B]
  • SWISS-PROT database: [Q8W1R6]
  • Domain organization of [Q8W1R6_GRISI] by SWISSPFAM
    • Other resources with information on 1HQL
  • Community annotation for 1HQL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science