1HRY Dna Binding Protein Dna date May 09, 1995
title The 3d Structure Of The Human Sry-Dna Complex Solved By Multid-Dimensional Heteronuclear-Edited And-Filtered Nmr
authors G.M.Clore, M.H.Werner, J.R.Huth, A.M.Gronenborn
compound source
Molecule: Dna (5'-D(Gpcpapcpapapapc)-3')
Chain: B
Engineered: Yes
 Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Dna (5'-D(Gptptptpgptpgpc)-3')
Chain: C
Engineered: Yes
Synthetic: Yes
Other_details: Chemically Synthesized

Molecule: Human Sry
Chain: A
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
related structures by homologous chain: 1GT0, 1HRZ
Primary referenceMolecular basis of human 46X,Y sex reversal revealed from the three-dimensional solution structure of the human SRY-DNA complex., Werner MH, Huth JR, Gronenborn AM, Clore GM, Cell 1995 Jun 2;81(5):705-14. PMID:7774012
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HRY
  • Original NMR restraints for 1HRY from PDB
  • Retrieve 1HRY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HRY from S2C, [Save to disk]
    • View 1HRY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1HRY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HRY, from MSDmotif at EBI
  • Genome occurence of 1HRY's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hrya_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hry from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hry_A] [1hry_B] [1hry_C]
  • SWISS-PROT database: [Q05066]
  • Domain organization of [SRY_HUMAN] by SWISSPFAM
  • Domain found in 1HRY: [HMG ] by SMART
  • Alignments of the sequence of 1HRY with the sequences similar proteins can be viewed for 1HRY's classification [SRY_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [SRY_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1HRY
  • Community annotation for 1HRY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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