1HU8 Dna Binding Protein date Jan 04, 2001
title Crystal Structure Of The Mouse P53 Core Dna-Binding Domain At 2.7a Resolution
authors K.Zhao, X.Chai, K.Johnston, A.Clements, R.Marmorstein
compound source
Molecule: Cellular Tumor Antigen P53
Chain: A, B, C
Fragment: Residues 99-284
Synonym: Tumor Suppressor P53; P53
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Strain: Dh5a
Gene: P53
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset
symmetry Space Group: C 2 2 21
R_factor 0.239 R_Free 0.299
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.676 119.992 184.238 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ZN enzyme
related structures by homologous chain: 1GZH
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of the mouse p53 core DNA-binding domain at 2.7 A resolution., Zhao K, Chai X, Johnston K, Clements A, Marmorstein R, J Biol Chem 2001 Apr 13;276(15):12120-7. PMID:11152481
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (97 Kb) [Save to disk]
  • Biological Unit Coordinates (1hu8.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (1hu8.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (1hu8.pdb3.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 1HU8
  • CSU: Contacts of Structural Units for 1HU8
  • Likely Quarternary Molecular Structure file(s) for 1HU8
  • Structure Factors (162 Kb)
  • Retrieve 1HU8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HU8 from S2C, [Save to disk]
  • Re-refined 1hu8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HU8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HU8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HU8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hu8a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hu8b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hu8c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1hu8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hu8_A] [1hu8_C] [1hu8_B] [1hu8]
  • SWISS-PROT database: [P02340]
  • Domain organization of [P53_MOUSE] by SWISSPFAM
  • Other resources with information on 1HU8
  • Community annotation for 1HU8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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