1HUO Transferase Dna date Jan 04, 2001
title Crystal Structure Of Dna Polymerase Beta Complexed With Dna Tmppcp
authors J.W.Arndt, W.Gong, X.Zhong, A.K.Showalter, J.Liu, Z.Lin, C.Paxson, D.Tsai, M.K.Chan
compound source
Molecule: 5'-D(Apaptpapgpgpcpgptpcpg)-3'
Chain: T, C
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Pcpgpapcpgpcpc)-3'
Chain: P, D
Engineered: Yes

Synthetic: Yes

Molecule: Dna Polymerase Beta
Chain: A, B
Ec: 2.7.7.7
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt17b
symmetry Space Group: P 1 21 1
R_factor 0.226 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.911 56.162 86.055 90.00 107.25 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand CR, TTE enzyme Transferase E.C.2.7.7.7 BRENDA
note 1HUO supersedes 1CF6
related structures by homologous chain: 1BPZ, 1HUZ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInsight into the catalytic mechanism of DNA polymerase beta: structures of intermediate complexes., Arndt JW, Gong W, Zhong X, Showalter AK, Liu J, Dunlap CA, Lin Z, Paxson C, Tsai MD, Chan MK, Biochemistry 2001 May 8;40(18):5368-75. PMID:11330999
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (125 Kb) [Save to disk]
  • Biological Unit Coordinates (1huo.pdb1.gz) 60 Kb
  • Biological Unit Coordinates (1huo.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 1HUO
  • CSU: Contacts of Structural Units for 1HUO
  • Likely Quarternary Molecular Structure file(s) for 1HUO
  • Retrieve 1HUO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HUO from S2C, [Save to disk]
  • View 1HUO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HUO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HUO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1huoa1, region A:10-91 [Jmol] [rasmolscript] [script source]
        - Domain d1huoa4, region A:149-334 [Jmol] [rasmolscript] [script source]
        - Domain d1huoa3, region A:92-148 [Jmol] [rasmolscript] [script source]
        - Domain d1huob1, region B:10-91 [Jmol] [rasmolscript] [script source]
        - Domain d1huob4, region B:149-334 [Jmol] [rasmolscript] [script source]
        - Domain d1huob3, region B:92-148 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1huo_P] [1huo] [1huo_A] [1huo_C] [1huo_T] [1huo_B] [1huo_D]
  • SWISS-PROT database: [P06766]
  • Domain organization of [DPOLB_RAT] by SWISSPFAM
  • Domains found in 1HUO: [HhH1] [POLXc ] by SMART
  • Other resources with information on 1HUO
  • Community annotation for 1HUO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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