1HZ3 Sugar Binding Protein date Jan 23, 2001
title Alzheimer'S Disease Amyloid-Beta Peptide (Residues 10-35)
authors S.Zhang, K.Iwata, M.J.Lachenmann, J.W.Peng, S.Li, E.R.Stimson, Y.Lu, A.M.Felix, J.E.Maggio, J.P.Lee
compound source
Molecule: A-Beta Amyloid
Chain: A
Fragment: Residues 10-35
Synonym: Beta-Amyloid A4
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Is Taken From The A-Beta Peptide, Which Occurs Naturally In Homo Sapiens (Human). The Peptide Was Synthesized By Merrifield Solid-Phase Methodology.
methodSolution NMR
Primary referenceThe Alzheimer's peptide a beta adopts a collapsed coil structure in water., Zhang S, Iwata K, Lachenmann MJ, Peng JW, Li S, Stimson ER, Lu Y, Felix AM, Maggio JE, Lee JP, J Struct Biol 2000 Jun;130(2-3):130-41. PMID:10940221
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1HZ3
  • Original NMR restraints for 1HZ3 from PDB
  • Retrieve 1HZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HZ3 from S2C, [Save to disk]
    • View 1HZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • On AstexViewer, from MSD-EBI (viewer documentation).
  • On RasMol (Install RasMol freeware) Here's help on how to use RasMol.
    • Visual 3D analysis of 1HZ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HZ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hz3a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1hz3 from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hz3_A]
  • SWISS-PROT database: [P05067]
  • Belongs to the amyloid -protein peptide (app) family according to TCDB.
  • Domain organization of [A4_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1HZ3 with the sequences similar proteins can be viewed for 1HZ3's classification [A4_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [A4_HUMAN] at ProtoMap. Click on the Cluster number.
    • Other resources with information on 1HZ3
  • Community annotation for 1HZ3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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