1HZ8 Lipid Binding Protein date Jan 23, 2001
title Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor
authors N.D.Kurniawan, K.Aliabadizadeh, I.M.Brereton, P.A.Kroon, R.Smith
compound source
Molecule: Low Density Lipoprotein Receptor
Chain: A
Fragment: Egf-Ab Concatemer (Residues 314-395)
Synonym: Ldl Receptor
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5-Alpha; Bl21-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t; Pet-30a+
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1HJ7, 1I0U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and backbone dynamics of a concatemer of epidermal growth factor homology modules of the human low-density lipoprotein receptor., Kurniawan ND, Aliabadizadeh K, Brereton IM, Kroon PA, Smith R, J Mol Biol 2001 Aug 10;311(2):341-56. PMID:11478865
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1HZ8
  • CSU: Contacts of Structural Units for 1HZ8
  • Original NMR restraints for 1HZ8 from PDB
  • Retrieve 1HZ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HZ8 from S2C, [Save to disk]
  • View 1HZ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HZ8
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HZ8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hz8a1, region A:1-41 [Jmol] [rasmolscript] [script source]
        - Domain d1hz8a2, region A:42-82 [Jmol] [rasmolscript] [script source]
  • Fold representative 1hz8 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hz8_A] [1hz8]
  • SWISS-PROT database: [P01130]
  • Domain organization of [LDLR_HUMAN] by SWISSPFAM
  • Domains found in 1HZ8: [EGF_CA] [EGF_like ] by SMART
  • Other resources with information on 1HZ8
  • Community annotation for 1HZ8 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HZ8 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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