1HZD Lyase date Jan 24, 2001
title Crystal Structure Of Human Auh Protein, An Rna-Binding Homologue Of Enoyl-Coa Hydratase
authors K.Kurimoto, S.Fukai, O.Nureki, Y.Muto, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Au-Binding Proteinenoyl-Coa Hydratase
Chain: A, B, C, D, E, F
Synonym: Auh
Ec: 4.2.1.17
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Auh
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.130 132.070 80.040 90.00 108.14 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Lyase E.C.4.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of human AUH protein, a single-stranded RNA binding homolog of enoyl-CoA hydratase., Kurimoto K, Fukai S, Nureki O, Muto Y, Yokoyama S, Structure (Camb) 2001 Dec;9(12):1253-63. PMID:11738050
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (249 Kb) [Save to disk]
  • Biological Unit Coordinates (1hzd.pdb1.gz) 245 Kb
  • CSU: Contacts of Structural Units for 1HZD
  • Likely Quarternary Molecular Structure file(s) for 1HZD
  • Structure Factors (587 Kb)
  • Retrieve 1HZD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HZD from S2C, [Save to disk]
  • Re-refined 1hzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HZD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HZD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HZD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hzda_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1hzdb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hzdc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1hzdd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hzde_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1hzdf_, region F [Jmol] [rasmolscript] [script source]
  • Fold representative 1hzd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hzd_F] [1hzd_D] [1hzd_E] [1hzd_B] [1hzd] [1hzd_C] [1hzd_A]
  • SWISS-PROT database: [Q13825]
  • Domain organization of [AUHM_HUMAN] by SWISSPFAM
  • Other resources with information on 1HZD
  • Community annotation for 1HZD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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