1HZH CRYSTAL STRUCTURE OF THE INTACT HUMAN IGG B12 WITH BROAD AND POTENT ACTIVITY AGAINST PRIMARY HIV-1 ISOLATES: A TEMPLATE FOR HIV VACCINE DESIGN date
authors Saphire, E.O., Burton, D.R., Wilson, I.A.
compound source
symmetry
R_factor
R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.70
ligand BMA, FUC, GAL, MAN, NAG enzyme
note 1HZH (Molecule of the Month:pdb21)
related structures by homologous chain: 1DEE, 1DN2, 1I1C, 1YYL
Gene
Ontology
ChainFunctionProcessComponent
H, K


M, L


Primary referenceCrystal structure of a neutralizing human IGG against HIV-1: a template for vaccine design., Saphire EO, Parren PW, Pantophlet R, Zwick MB, Morris GM, Rudd PM, Dwek RA, Stanfield RL, Burton DR, Wilson IA, Science 2001 Aug 10;293(5532):1155-9. PMID:11498595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (215 Kb) [Save to disk]
  • Biological Unit Coordinates (1hzh.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 1HZH
  • CSU: Contacts of Structural Units for 1HZH
  • Likely Quarternary Molecular Structure file(s) for 1HZH
  • Structure Factors (1110 Kb)
  • Retrieve 1HZH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HZH from S2C, [Save to disk]
  • Re-refined 1hzh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1HZH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HZH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HZH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hzhh1, region H:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhh2, region H:114-235 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhh3, region H:236-359 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhh4, region H:360-478 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhk1, region K:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhk2, region K:114-235 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhk3, region K:239-359 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhk4, region K:360-475 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhl2, region L:108-214 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhm1, region M:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1hzhm2, region M:108-214 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hzh_L] [1hzh_K] [1hzh_M] [1hzh] [1hzh_H]
  • SWISS-PROT database: [P01857]
  • Domain organization of [IGHG1_HUMAN] by SWISSPFAM
  • Domains found in 1HZH: [IG_like] [IGv ] by SMART
    • Other resources with information on 1HZH
  • Community annotation for 1HZH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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