1I17 NMR STRUCTURE OF MOUSE DOPPEL 51-157 date
authors Mo, H., Moore, R.C., Cohen, F.E., Westaway, D., Prusiner, S.B., Wright, P.E., Dyson, H.J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1LG4
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo different neurodegenerative diseases caused by proteins with similar structures., Mo H, Moore RC, Cohen FE, Westaway D, Prusiner SB, Wright PE, Dyson HJ, Proc Natl Acad Sci U S A 2001 Feb 27;98(5):2352-7. PMID:11226243
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (574 Kb) [Save to disk]
  • Biological Unit Coordinates (1i17.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1I17
  • Original NMR restraints for 1I17 from PDB
  • Retrieve 1I17 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I17 from S2C, [Save to disk]
  • View 1I17 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I17
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1I17, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i17a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1i17 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i17] [1i17_A]
  • SWISS-PROT database: [Q9QUG3]
  • Domain organization of [PRND_MOUSE] by SWISSPFAM
  • Other resources with information on 1I17
  • Community annotation for 1I17 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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