1I95 Ribosome date Mar 18, 2001
title Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With Edeine
authors M.Pioletti, F.Schluenzen, J.Harms, R.Zarivach, M.Gluehmann, H.Avila, H.Bartels, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi
compound source
Molecule: 16s Rrna
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: L

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: P

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: Q

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: R

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: S

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: T

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein Thx
Chain: U

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor 0.237 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
407.100 407.100 174.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.50 Å
ligand EDE, MG, WO2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


Primary referenceCrystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3., Pioletti M, Schlunzen F, Harms J, Zarivach R, Gluhmann M, Avila H, Bashan A, Bartels H, Auerbach T, Jacobi C, Hartsch T, Yonath A, Franceschi F, EMBO J 2001 Apr 17;20(8):1829-39. PMID:11296217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (655 Kb) [Save to disk]
  • Biological Unit Coordinates (1i95.pdb1.gz) 638 Kb
  • LPC: Ligand-Protein Contacts for 1I95
  • CSU: Contacts of Structural Units for 1I95
  • Likely Quarternary Molecular Structure file(s) for 1I95
  • Retrieve 1I95 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I95 from S2C, [Save to disk]
  • View 1I95 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I95
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1I95, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i95b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1i95c2, region C:107-207 [Jmol] [rasmolscript] [script source]
        - Domain d1i95c1, region C:2-106 [Jmol] [rasmolscript] [script source]
        - Domain d1i95d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1i95e2, region E:2-73 [Jmol] [rasmolscript] [script source]
        - Domain d1i95e1, region E:74-157 [Jmol] [rasmolscript] [script source]
        - Domain d1i95f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1i95g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1i95h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1i95i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1i95j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1i95k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1i95l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1i95m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1i95n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1i95o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1i95p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1i95q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1i95r_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1i95s_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1i95t_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1i95u_, region U [Jmol] [rasmolscript] [script source]
  • Fold representative 1i95 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i95_R] [1i95_J] [1i95_T] [1i95_D] [1i95_M] [1i95_U] [1i95_N] [1i95_F] [1i95_P] [1i95_O] [1i95_B] [1i95_K] [1i95_G] [1i95_E] [1i95_L] [1i95_C] [1i95_S] [1i95_H] [1i95_Q] [1i95_A] [1i95] [1i95_I]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS3_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1I95: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1I95
  • Community annotation for 1I95 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1I95 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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