1IFR Immune System date Apr 13, 2001
title Structure Of Lamin Ac Globular Domain
authors S.Dhe-Paganon, E.D.Werner, S.E.Shoelson
compound source
Molecule: Lamin Ac
Chain: A
Fragment: Residues 436-552
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.430 52.550 67.440 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand GOL enzyme
note 1IFR is a representative structure
related structures by homologous chain: 1UFG
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the globular tail of nuclear lamin., Dhe-Paganon S, Werner ED, Chi YI, Shoelson SE, J Biol Chem 2002 May 17;277(20):17381-4. PMID:11901143
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1ifr.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1IFR
  • CSU: Contacts of Structural Units for 1IFR
  • Likely Quarternary Molecular Structure file(s) for 1IFR
  • Retrieve 1IFR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IFR from S2C, [Save to disk]
  • View 1IFR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IFR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1IFR from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IFR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ifra_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ifr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ifr] [1ifr_A]
  • SWISS-PROT database: [P02545]
  • Domain organization of [LMNA_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1IFR with the sequences similar proteins can be viewed for 1IFR's classification [LMNA_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [LMNA_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1IFR
  • Community annotation for 1IFR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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