1IGN Dna Binding Protein Dna date Feb 29, 1996
title Dna-Binding Domain Of Rap1 In Complex With Telomeric Dna Sit
authors P.Koenig, R.Giraldo, L.Chapman, D.Rhodes
compound source
Molecule: Dna (5'- D(Cpcpgpcpapcpapcpcpcpapcpapcpapcpc Papg
Chain: C, E
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Cpcptpgpgptpgptpgptpgpgpgptpgptpg Pcpg
Chain: D, F
Engineered: Yes

Synthetic: Yes

Molecule: Protein (Rap1)
Chain: A, B
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rap1 Dna Binding Domain
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pet3c
Expression_system_gene: Rap1 Dna Binding Domain 353 To 598
Other_details: T7 Promoter
symmetry Space Group: P 31
R_factor 0.219 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.610 90.610 80.360 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe crystal structure of the DNA-binding domain of yeast RAP1 in complex with telomeric DNA., Konig P, Giraldo R, Chapman L, Rhodes D, Cell 1996 Apr 5;85(1):125-36. PMID:8620531
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1ign.pdb1.gz) 50 Kb
  • Biological Unit Coordinates (1ign.pdb2.gz) 51 Kb
  • CSU: Contacts of Structural Units for 1IGN
  • Likely Quarternary Molecular Structure file(s) for 1IGN
  • Structure Factors (230 Kb)
  • Retrieve 1IGN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IGN from S2C, [Save to disk]
  • Re-refined 1ign structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IGN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IGN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IGN, from MSDmotif at EBI
  • Genome occurence of 1IGN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1igna1, region A:360-445 [Jmol] [rasmolscript] [script source]
        - Domain d1igna2, region A:446-594 [Jmol] [rasmolscript] [script source]
        - Domain d1ignb1, region B:360-445 [Jmol] [rasmolscript] [script source]
        - Domain d1ignb2, region B:446-594 [Jmol] [rasmolscript] [script source]
  • Fold representative 1ign from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ign_C] [1ign_E] [1ign_F] [1ign] [1ign_A] [1ign_D] [1ign_B]
  • SWISS-PROT database: [P11938]
  • Domain organization of [RAP1_YEAST] by SWISSPFAM
  • Domain found in 1IGN: [SANT ] by SMART
  • Other resources with information on 1IGN
  • Community annotation for 1IGN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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