1IN0 Structural Genomics, Unknown Function date May 11, 2001
title Yajq Protein (Hi1034)
authors A.Teplyakov, G.L.Gilliland, Structure 2 Function Project (S2f)
compound source
Molecule: Yajq Protein
Chain: A, B
Synonym: Hi1034
Engineered: Yes
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Gene: Yajq
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 2 2
R_factor 0.193 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.800 62.800 194.500 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.14 Å
ligand HG, MMC, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the YajQ protein from Haemophilus influenzae reveals a tandem of RNP-like domains., Teplyakov A, Obmolova G, Bir N, Reddy P, Howard AJ, Gilliland GL, J Struct Funct Genomics 2003;4(1):1-9. PMID:12943362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (1in0.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1in0.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1IN0
  • CSU: Contacts of Structural Units for 1IN0
  • Likely Quarternary Molecular Structure file(s) for 1IN0
  • Structure Factors (992 Kb)
  • Retrieve 1IN0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IN0 from S2C, [Save to disk]
  • Re-refined 1in0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1IN0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IN0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IN0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1in0a1, region A:2-89 [Jmol] [rasmolscript] [script source]
        - Domain d1in0a2, region A:90-163 [Jmol] [rasmolscript] [script source]
        - Domain d1in0b1, region B:2-89 [Jmol] [rasmolscript] [script source]
        - Domain d1in0b2, region B:90-163 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1in0_B] [1in0] [1in0_A]
  • SWISS-PROT database: [P44096]
  • Domain organization of [Y1034_HAEIN] by SWISSPFAM
    • Other resources with information on 1IN0
  • Community annotation for 1IN0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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