1IOB Cytokine date Mar 14, 1996
title Interleukin-1 Beta From Joint X-Ray And Nmr Refinement
authors B.Shaanan, G.M.Clore
compound source
Molecule: Interleukin-1 Beta
Chain: A
Synonym: Catabolin
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodX-Ray Diffraction; Solution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCombining experimental information from crystal and solution studies: joint X-ray and NMR refinement., Shaanan B, Gronenborn AM, Cohen GH, Gilliland GL, Veerapandian B, Davies DR, Clore GM, Science 1992 Aug 14;257(5072):961-4. PMID:1502561
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1iob.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1IOB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1IOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IOB from S2C, [Save to disk]
  • View 1IOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IOB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IOB, from MSDmotif at EBI
  • Genome occurence of 1IOB's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iob__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1iob from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iob_A] [1iob]
  • SWISS-PROT database: [P01584]
  • Domain organization of [IL1B_HUMAN] by SWISSPFAM
  • Domain found in 1IOB: [IL1 ] by SMART
  • Alignments of the sequence of 1IOB with the sequences similar proteins can be viewed for 1IOB's classification [IL1B_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [IL1B_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1IOB
  • Community annotation for 1IOB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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