1IQ3 Endocytosis Exocytosis date Jun 06, 2001
title Solution Structure Of The Eps15 Homology Domain Of A Human Pob1
authors S.Koshiba, T.Kigawa, J.Iwahara, A.Kikuchi, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Ralbp1-Interacting Protein (Partner Of Ralbp1)
Chain: A
Fragment: Eh Domain(Residues 126-228)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-2t
methodSolution NMR
ligand CA enzyme
related structures by homologous chain: 1FI6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of the Eps15 homology domain of a human POB1 (partner of RalBP1)., Koshiba S, Kigawa T, Iwahara J, Kikuchi A, Yokoyama S, FEBS Lett 1999 Jan 15;442(2-3):138-42. PMID:9928989
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (525 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1IQ3
  • CSU: Contacts of Structural Units for 1IQ3
  • Retrieve 1IQ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IQ3 from S2C, [Save to disk]
  • View 1IQ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IQ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IQ3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iq3a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1iq3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iq3_A] [1iq3]
  • SWISS-PROT database: [Q8NFH8]
  • Domain organization of [REPS2_HUMAN] by SWISSPFAM
  • Domain found in 1IQ3: [EH ] by SMART
  • Other resources with information on 1IQ3
  • Community annotation for 1IQ3 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science