1IQT Rna Binding Protein date Aug 01, 2001
title Solution Structure Of The C-Terminal Rna-Binding Domain Of Heterogeneous Nuclear Ribonucleoprotein D0 (Auf1)
authors M.Katahira, Y.Miyanoiri, Y.Enokizono, G.Matsuda, T.Nagata, F.Ishi S.Uesugi
compound source
Molecule: Heterogeneous Nuclear Ribonucleoprotein D0
Chain: A
Fragment: C-Terminal Domain
Synonym: Auf1
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
methodSolution NMR
related structures by homologous chain: 1X0F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the C-terminal RNA-binding domain of hnRNP D0 (AUF1), its interactions with RNA and DNA, and change in backbone dynamics upon complex formation with DNA., Katahira M, Miyanoiri Y, Enokizono Y, Matsuda G, Nagata T, Ishikawa F, Uesugi S, J Mol Biol 2001 Aug 31;311(5):973-88. PMID:11531333
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (397 Kb) [Save to disk]
  • Biological Unit Coordinates (1iqt.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1IQT
  • Retrieve 1IQT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IQT from S2C, [Save to disk]
    • View 1IQT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IQT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IQT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iqta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iqt_A] [1iqt]
  • SWISS-PROT database: [Q14103]
  • Domain organization of [HNRPD_HUMAN] by SWISSPFAM
  • Domain found in 1IQT: [RRM ] by SMART
    • Other resources with information on 1IQT
  • Community annotation for 1IQT at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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