1IRI Crystal structure of human autocrine motility factor complexed with an inhibitor date
authors Tanaka, N., Haga, A., Uemura, H., Akiyama, H., Funasaka, T., Nagase, H., Raz, A., Nakamura, K.T.
compound source
symmetry
R_factor
R_Free 0.2410000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand E4P enzyme
related structures by homologous chain: 1GZD, 1HOX
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • cytokine activity
  • growth factor activity


    • Primary referenceInhibition mechanism of cytokine activity of human autocrine motility factor examined by crystal structure analyses and site-directed mutagenesis studies., Tanaka N, Haga A, Uemura H, Akiyama H, Funasaka T, Nagase H, Raz A, Nakamura KT, J Mol Biol 2002 May 10;318(4):985-97. PMID:12054796
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (371 Kb) [Save to disk]
  • Biological Unit Coordinates (1iri.pdb1.gz) 186 Kb
  • Biological Unit Coordinates (1iri.pdb2.gz) 185 Kb
  • LPC: Ligand-Protein Contacts for 1IRI
  • CSU: Contacts of Structural Units for 1IRI
  • Likely Quarternary Molecular Structure file(s) for 1IRI
  • Retrieve 1IRI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IRI from S2C, [Save to disk]
    • View 1IRI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1IRI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IRI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1iria_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1irib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1iric_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1irid_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1iri] [1iri_A] [1iri_D] [1iri_C] [1iri_B]
  • SWISS-PROT database: [P06744]
  • Domain organization of [G6PI_HUMAN] by SWISSPFAM
    • Other resources with information on 1IRI
  • Community annotation for 1IRI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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