1ISM Hydrolase date Dec 05, 2001
title Crystal Structure Analysis Of Bst-1cd157 Complexed With Nic
authors S.Yamamoto-Katayama, M.Ariyoshi, K.Ishihara, T.Hirano, H.Jingami K.Morikawa
compound source
Molecule: Bone Marrow Stromal Cell Antigen 1
Chain: A, B
Fragment: Extracellular Region
Synonym: Bst-1cd157, Adp-Ribosyl Cyclase 2
Ec: 3.2.2.5
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five
Expression_system_vector_type: Baculovirus
Expression_system_vector: Autographa Californica Nuclear Polyhedrosis Virus
symmetry Space Group: P 21 21 21
R_factor 0.189 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.896 112.728 133.553 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand NAG, NCA enzyme Hydrolase E.C.3.2.2.5 BRENDA
related structures by homologous chain: 1ISG
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of cell ...

  • Primary referenceCrystallographic studies on human BST-1/CD157 with ADP-ribosyl cyclase and NAD glycohydrolase activities., Yamamoto-Katayama S, Ariyoshi M, Ishihara K, Hirano T, Jingami H, Morikawa K, J Mol Biol 2002 Feb 22;316(3):711-23. PMID:11866528
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1ism.pdb1.gz) 82 Kb
  • LPC: Ligand-Protein Contacts for 1ISM
  • CSU: Contacts of Structural Units for 1ISM
  • Likely Quarternary Molecular Structure file(s) for 1ISM
  • Structure Factors (136 Kb)
  • Retrieve 1ISM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ISM from S2C, [Save to disk]
  • Re-refined 1ism structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1ISM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ISM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ISM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1isma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ismb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ism_A] [1ism] [1ism_B]
  • SWISS-PROT database: [Q10588]
  • Domain organization of [BST1_HUMAN] by SWISSPFAM
  • Other resources with information on 1ISM
  • Community annotation for 1ISM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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