1IXD Antitumor Protein date Jun 19, 2002
title Solution Structure Of The Cap-Gly Domain From Human Cylindromatosis Tomour-Suppressor Cyld
authors K.Saito, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Cylindromatosis Tumour-Suppressor Cyld
Chain: A
Fragment: Cap-Gly Domain
Synonym: Probable Ubiquitin Carboxyl-Terminal Hydrolase Cyld, Ubiquitin Thiolesterase Cyld, Ubiquitin-Specific Processing Protease Cyld, Deubiquitinating Enzyme Cyld, Hspc057;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fh04363
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P011213-03
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
enzyme Hydrolase E.C. BRENDA
Primary referenceThe CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma., Saito K, Kigawa T, Koshiba S, Sato K, Matsuo Y, Sakamoto A, Takagi T, Shirouzu M, Yabuki T, Nunokawa E, Seki E, Matsuda T, Aoki M, Miyata Y, Hirakawa N, Inoue M, Terada T, Nagase T, Kikuno R, Nakayama M, Ohara O, Tanaka A, Yokoyama S, Structure (Camb) 2004 Sep;12(9):1719-28. PMID:15341735
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (509 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1IXD
  • Retrieve 1IXD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IXD from S2C, [Save to disk]
  • View 1IXD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IXD
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IXD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ixda_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ixd from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ixd_A] [1ixd]
  • SWISS-PROT database: [Q9NQC7]
  • Domain organization of [CYLD_HUMAN] by SWISSPFAM
  • Domain found in 1IXD: [CAP_GLY ] by SMART
  • Other resources with information on 1IXD
  • Community annotation for 1IXD at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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