1J0S Cytokine date Nov 21, 2002
title Solution Structure Of The Human Interleukin-18
authors Z.Kato, J.Jee, H.Shikano, M.Mishima, I.Ohki, T.Yoneda, T.Hara, K.To N.Kondo, M.Shirakawa
compound source
Molecule: Interleukin-18
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure and binding mode of interleukin-18., Kato Z, Jee J, Shikano H, Mishima M, Ohki I, Ohnishi H, Li A, Hashimoto K, Matsukuma E, Omoya K, Yamamoto Y, Yoneda T, Hara T, Kondo N, Shirakawa M, Nat Struct Biol 2003 Nov;10(11):966-71. Epub 2003 Oct 5. PMID:14528293
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (821 Kb) [Save to disk]
  • Biological Unit Coordinates (1j0s.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1J0S
  • Retrieve 1J0S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J0S from S2C, [Save to disk]
  • View 1J0S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J0S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J0S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j0sa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j0s_A] [1j0s]
  • SWISS-PROT database: [Q14116]
  • Domain organization of [IL18_HUMAN] by SWISSPFAM
  • Domain found in 1J0S: [IL1 ] by SMART
  • Other resources with information on 1J0S
  • Community annotation for 1J0S at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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