1J1H Rna Binding Protein date Dec 04, 2002
title Solution Structure Of A Tmrna-Binding Protein, Smpb, From Th Thermophilus
authors T.Someya, N.Nameki, H.Hosoi, S.Suzuki, H.Hatanaka, M.Fujii, T.Tera M.Shirouzu, Y.Inoue, T.Shibata, S.Kuramitsu, S.Yokoyama, G.Kawai Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Small Protein B
Chain: A
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11b
methodSolution NMR
related structures by homologous chain: 1WJX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of a tmRNA-binding protein, SmpB, from Thermus thermophilus., Someya T, Nameki N, Hosoi H, Suzuki S, Hatanaka H, Fujii M, Terada T, Shirouzu M, Inoue Y, Shibata T, Kuramitsu S, Yokoyama S, Kawai G, FEBS Lett 2003 Jan 30;535(1-3):94-100. PMID:12560085
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (418 Kb) [Save to disk]
  • Biological Unit Coordinates (1j1h.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1J1H
  • Retrieve 1J1H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J1H from S2C, [Save to disk]
    • View 1J1H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J1H
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J1H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j1ha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j1h_A] [1j1h]
  • SWISS-PROT database: [Q8RR57]
  • Domain organization of [SSRP_THET8] by SWISSPFAM
    • Other resources with information on 1J1H
  • Community annotation for 1J1H at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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