1J1J Dna Binding Protein date Dec 06, 2002
title Crystal Structure Of Human Translin
authors I.Sugiura, C.Sasaki, T.Hasegawa, T.Kohno, S.Sugio, H.Moriyama, M.K T.Matsuzaki
compound source
Molecule: Translin
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: M15[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe9
symmetry Space Group: C 2 2 21
R_factor 0.229 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
129.420 135.270 134.350 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1KEY
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity


  • Primary referenceStructure of human translin at 2.2 A resolution., Sugiura I, Sasaki C, Hasegawa T, Kohno T, Sugio S, Moriyama H, Kasai M, Matsuzaki T, Acta Crystallogr D Biol Crystallogr. 2004 Apr;60(Pt 4):674-9. Epub 2004, Mar 23. PMID:15039555
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (1j1j.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (1j1j.pdb2.gz) 75 Kb
  • Biological Unit Coordinates (1j1j.pdb3.gz) 75 Kb
  • Biological Unit Coordinates (1j1j.pdb4.gz) 74 Kb
  • Biological Unit Coordinates (1j1j.pdb5.gz) 293 Kb
  • CSU: Contacts of Structural Units for 1J1J
  • Likely Quarternary Molecular Structure file(s) for 1J1J
  • Structure Factors (484 Kb)
  • Retrieve 1J1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J1J from S2C, [Save to disk]
  • Re-refined 1j1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J1J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j1ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j1jb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j1jc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1j1jd_, region D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j1j_C] [1j1j_B] [1j1j] [1j1j_D] [1j1j_A]
  • SWISS-PROT database: [Q15631]
  • Domain organization of [TSN_HUMAN] by SWISSPFAM
  • Other resources with information on 1J1J
  • Community annotation for 1J1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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