1J1L Metal Binding Protein date Dec 10, 2002
title Crystal Structure Of Human Pirin: A Bcl-3 And Nuclear Factor Interacting Protein And A Cupin Superfamily Member
authors H.Pang, M.Bartlam, Q.Zeng, G.F.Gao, Z.Rao
compound source
Molecule: Pirin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.278 67.116 106.389 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE2, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • transcription cofactor activ...


    • Primary referenceCrystal structure of human pirin: an iron-binding nuclear protein and transcription cofactor., Pang H, Bartlam M, Zeng Q, Miyatake H, Hisano T, Miki K, Wong LL, Gao GF, Rao Z, J Biol Chem 2004 Jan 9;279(2):1491-8. Epub 2003 Oct 22. PMID:14573596
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1j1l.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1J1L
  • CSU: Contacts of Structural Units for 1J1L
  • Likely Quarternary Molecular Structure file(s) for 1J1L
  • Structure Factors (380 Kb)
  • Retrieve 1J1L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J1L from S2C, [Save to disk]
  • Re-refined 1j1l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J1L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J1L
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J1L, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j1la_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j1l] [1j1l_A]
  • SWISS-PROT database: [O00625]
  • Domain organization of [PIR_HUMAN] by SWISSPFAM
    • Other resources with information on 1J1L
  • Community annotation for 1J1L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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