1J2J Protein Transport date Jan 05, 2003
title Crystal Structure Of Gga1 Gat N-Terminal Region In Complex With Arf1 Gtp Form
authors T.Shiba, M.Kawasaki, H.Takatsu, T.Nogi, N.Matsugaki, N.Igarashi, M.Suzuki, R.Kato, K.Nakayama, S.Wakatsuki
compound source
Molecule: Adp-Ribosylation Factor 1
Chain: A
Fragment: Residues 18-181
Synonym: Arf1
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex Ht

Molecule: Adp-Ribosylation Factor Binding Protein Gga1
Chain: B
Fragment: Gat N-Terminal Region
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex4t-2
symmetry Space Group: P 21 21 21
R_factor 0.198 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.410 61.894 76.874 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand GTP, IOD, MG enzyme
related structures by homologous chain: 1MR3, 1O3Y
Gene
Ontology
ChainFunctionProcessComponent
A
  • phospholipase D activator ac...


  • B


    Primary referenceMolecular mechanism of membrane recruitment of GGA by ARF in lysosomal protein transport., Shiba T, Kawasaki M, Takatsu H, Nogi T, Matsugaki N, Igarashi N, Suzuki M, Kato R, Nakayama K, Wakatsuki S, Nat Struct Biol 2003 May;10(5):386-93. PMID:12679809
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1j2j.pdb1.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1J2J
  • CSU: Contacts of Structural Units for 1J2J
  • Likely Quarternary Molecular Structure file(s) for 1J2J
  • Structure Factors (241 Kb)
  • Retrieve 1J2J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J2J from S2C, [Save to disk]
  • Re-refined 1j2j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J2J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J2J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J2J, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j2ja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j2jb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1j2j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j2j_B] [1j2j_A] [1j2j]
  • SWISS-PROT database: [Q8BSL7] [Q9UJY5]
  • Domain organization of [ARF2_MOUSE] [GGA1_HUMAN] by SWISSPFAM
  • Domain found in 1J2J: [ARF ] by SMART
  • Other resources with information on 1J2J
  • Community annotation for 1J2J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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