1J3C Dna Binding Protein date Jan 23, 2003
title Solution Structure Of The C-Terminal Domain Of The Hmgb2
authors J.Kurita, H.Shimahara, M.Yoshida, S.Tate
compound source
Molecule: High Mobility Group Protein 2
Chain: A
Fragment: C-Terminal Domain, B Domain
Synonym: High Mobility Group B2, Hmg2, Hmgb2
Engineered: Yes
Mutation: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pet
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-22b
methodSolution NMR
related structures by homologous chain: 1HSN, 1J3D
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (627 Kb) [Save to disk]
  • Biological Unit Coordinates (1j3c.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1J3C
  • Original NMR restraints for 1J3C from PDB
  • Retrieve 1J3C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J3C from S2C, [Save to disk]
  • View 1J3C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J3C
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J3C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3ca_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j3c] [1j3c_A]
  • SWISS-PROT database: [P17741]
  • Domain organization of [HMGB2_PIG] by SWISSPFAM
  • Domain found in 1J3C: [HMG ] by SMART
  • Other resources with information on 1J3C
  • Community annotation for 1J3C at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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