1J3T Endocytosis Exocytosis date Feb 13, 2003
title Solution Structure Of The Second Sh3 Domain Of Human Interse (Kiaa1256)
authors N.Nameki, S.Koshiba, N.Tochio, N.Kobayashi, M.Inoue, T.Kigawa, S.Y Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Intersectin 2
Chain: A
Fragment: Sh3 Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Hh15293
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P021015-57
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (361 Kb) [Save to disk]
  • Biological Unit Coordinates (1j3t.pdb1.gz) 18 Kb
  • CSU: Contacts of Structural Units for 1J3T
  • Retrieve 1J3T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J3T from S2C, [Save to disk]
    • View 1J3T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J3T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J3T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3ta_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j3t] [1j3t_A]
  • SWISS-PROT database: [Q9NZM3]
  • Domain organization of [ITSN2_HUMAN] by SWISSPFAM
  • Domain found in 1J3T: [SH3 ] by SMART
    • Other resources with information on 1J3T
  • Community annotation for 1J3T at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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