1J4E Lyase date Sep 19, 2001
title Fructose-1,6-Bisphosphate Aldolase Covalently Bound To The S Dihydroxyacetone Phosphate
authors K.H.Choi, J.Shi, C.E.Hopkins, D.R.Tolan, K.N.Allen
compound source
Molecule: Fructose-Bisphosphate Aldolase A
Chain: A, B, C, D
Synonym: Muscle-Type Aldolase
Ec: 4.1.2.13
Engineered: Yes
Mutation: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Muscle
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_cellular_location: Cytoplasm
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppb14
symmetry Space Group: P 1 21 1
R_factor 0.213 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.229 99.388 84.484 90.00 98.29 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand 13P enzyme Lyase E.C.4.1.2.13 BRENDA
note 1J4E (Molecule of the Month:pdb50)
related structures by homologous chain: 1EWE, 4ALD
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSnapshots of catalysis: the structure of fructose-1,6-(bis)phosphate aldolase covalently bound to the substrate dihydroxyacetone phosphate., Choi KH, Shi J, Hopkins CE, Tolan DR, Allen KN, Biochemistry 2001 Nov 20;40(46):13868-75. PMID:11705376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (198 Kb) [Save to disk]
  • Biological Unit Coordinates (1j4e.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 1J4E
  • CSU: Contacts of Structural Units for 1J4E
  • Likely Quarternary Molecular Structure file(s) for 1J4E
  • Structure Factors (591 Kb)
  • Retrieve 1J4E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J4E from S2C, [Save to disk]
  • Re-refined 1j4e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J4E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J4E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J4E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j4ea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j4eb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1j4ec_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1j4ed_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j4e_B] [1j4e_A] [1j4e_D] [1j4e] [1j4e_C]
  • SWISS-PROT database: [P00883]
  • Domain organization of [ALDOA_RABIT] by SWISSPFAM
  • Other resources with information on 1J4E
  • Community annotation for 1J4E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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