1J75 Immune System Dna date May 15, 2001
title Crystal Structure Of The Dna-Binding Domain Zalpha Of Dlm-1 Z-Dna
authors T.Schwartz, J.Behlke, K.Lowenhaupt, U.Heinemann, A.Rich
compound source
Molecule: 5'-D(Tpcpgpcpgpcpg)-3'
Chain: B
Engineered: Yes
Synthetic: Yes

Molecule: Tumor Stroma And Activated Macrophage Protein Dlm
Chain: A
Fragment: N-Terminal Winged-Helix Domain Zalpha
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Novablue (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 65 2 2
R_factor 0.218 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.611 63.611 72.238 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins., Schwartz T, Behlke J, Lowenhaupt K, Heinemann U, Rich A, Nat Struct Biol 2001 Sep;8(9):761-5. PMID:11524677
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1j75.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 1J75
  • Likely Quarternary Molecular Structure file(s) for 1J75
  • Structure Factors (54 Kb)
  • Retrieve 1J75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J75 from S2C, [Save to disk]
  • Re-refined 1j75 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J75
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J75, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j75a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1j75 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j75] [1j75_A] [1j75_B]
  • SWISS-PROT database: [Q9QY24]
  • Domain organization of [ZBP1_MOUSE] by SWISSPFAM
  • Domain found in 1J75: [Zalpha ] by SMART
  • Other resources with information on 1J75
  • Community annotation for 1J75 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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