1J7D Unknown Function date May 16, 2001
title Crystal Structure Of Hmms2-Hubc13
authors T.F.Moraes, R.A.Edwards, S.Mckenna, L.Pashushok, W.Xiao, J.N.M.Glover, M.J.Ellison
compound source
Molecule: Mms2
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ubiquitin-Conjugating Enzyme E2-17 Kda
Chain: B
Synonym: Ubc13
Ec: 6.3.2.19
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.132 74.137 91.489 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand
enzyme Ligase E.C.6.3.2.19 BRENDA
note 1J7D is a representative structure
related structures by homologous chain: 1J74, 1JAT, 1JBB
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystal structure of the human ubiquitin conjugating enzyme complex, hMms2-hUbc13., Moraes TF, Edwards RA, McKenna S, Pastushok L, Xiao W, Glover JN, Ellison MJ, Nat Struct Biol 2001 Aug;8(8):669-73. PMID:11473255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1j7d.pdb1.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1J7D
  • Likely Quarternary Molecular Structure file(s) for 1J7D
  • Structure Factors (207 Kb)
  • Retrieve 1J7D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J7D from S2C, [Save to disk]
  • Re-refined 1j7d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J7D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J7D
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J7D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j7da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j7db_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1j7d from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j7d_B] [1j7d] [1j7d_A]
  • SWISS-PROT database: [Q15819] [P61088]
  • Domain organization of [UB2V2_HUMAN] [UBE2N_HUMAN] by SWISSPFAM
  • Domain found in 1J7D: [UBCc ] by SMART
  • Other resources with information on 1J7D
  • Community annotation for 1J7D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science