1J7M Hydrolase date May 17, 2001
title The Third Fibronectin Type II Module From Human Matrix Metalloproteinase 2
authors K.Briknarova, M.Gehrmann, L.Banyai, H.Tordai, L.Patthy, M.Llinas
compound source
Molecule: Matrix Metalloproteinase 2
Chain: A
Fragment: Third Fibronectin Type II Module
Synonym: 72 Kda Type Iv Collagenase, Gelatinase A
Ec: 3.4.24.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmed23
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.24.24 BRENDA
related structures by homologous chain: 1CK7
Primary referenceGelatin-binding region of human matrix metalloproteinase-2: solution structure, dynamics, and function of the COL-23 two-domain construct., Briknarova K, Gehrmann M, Banyai L, Tordai H, Patthy L, Llinas M, J Biol Chem 2001 Jul 20;276(29):27613-21. PMID:11320090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (709 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1J7M
  • Original NMR restraints for 1J7M from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1J7M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J7M from S2C, [Save to disk]
  • View 1J7M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J7M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J7M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j7ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1j7m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j7m] [1j7m_A]
  • SWISS-PROT database: [P08253]
  • Domain organization of [MMP2_HUMAN] by SWISSPFAM
  • Domain found in 1J7M: [FN2 ] by SMART
  • Other resources with information on 1J7M
  • Community annotation for 1J7M at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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