1J7T Rna date May 18, 2001
title Complex Between Paromomycin And The 16s-Rrna A-Site At 2.5 A Resolution
authors Q.Vicens, E.Westhof
compound source
Molecule: 5'- R(Cpgpcpgpupcpapcpapcpcpgpgpupgpapapgpup Cpgpc)-3';
Chain: A, B
Engineered: Yes
Other_details: Escherichia Coli 16s Rrna A Site
Synthetic: Yes
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.000 45.900 95.300 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PAR enzyme
Primary referenceCrystal structure of paromomycin docked into the eubacterial ribosomal decoding A site., Vicens Q, Westhof E, Structure (Camb) 2001 Aug;9(8):647-58. PMID:11587639
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1j7t.pdb1.gz) 21 Kb
  • LPC: Ligand-Protein Contacts for 1J7T
  • CSU: Contacts of Structural Units for 1J7T
  • Likely Quarternary Molecular Structure file(s) for 1J7T
  • Structure Factors (63 Kb)
  • Retrieve 1J7T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J7T from S2C, [Save to disk]
  • Re-refined 1j7t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J7T in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J7T
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J7T, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 1j7t from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j7t_B] [1j7t_A] [1j7t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1J7T
  • Community annotation for 1J7T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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