1J7V Cytokine Receptor date May 18, 2001
title Human Il-10 Il-10r1 Complex
authors K.Josephson, N.Logsdon, M.R.Walter
compound source
Molecule: Interleukin-10
Chain: L
Synonym: Il-10; Cytokine Synthesis Inhibitory Factor; Csif
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Interleukin-10 Receptor Alpha Chain
Chain: R
Fragment: Extracellular Domain, Residues 22-235
Synonym: Il-10r1; Il-10r-A
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_cell_line: Schneider Cells
symmetry Space Group: P 32 1 2
R_factor 0.231 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.230 46.230 307.780 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.90 Å
related structures by homologous chain: 1Y6M
Gene
Ontology
ChainFunctionProcessComponent
L


Primary referenceCrystal structure of the IL-10/IL-10R1 complex reveals a shared receptor binding site., Josephson K, Logsdon NJ, Walter MR, Immunity 2001 Jul;15(1):35-46. PMID:11485736
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1j7v.pdb1.gz) 118 Kb
  • CSU: Contacts of Structural Units for 1J7V
  • Likely Quarternary Molecular Structure file(s) for 1J7V
  • Retrieve 1J7V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J7V from S2C, [Save to disk]
  • View 1J7V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J7V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J7V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j7vl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1j7vr2, region R:101-206 [Jmol] [rasmolscript] [script source]
        - Domain d1j7vr1, region R:2-100 [Jmol] [rasmolscript] [script source]
  • Fold representative 1j7v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j7v_R] [1j7v_L] [1j7v]
  • SWISS-PROT database: [Q13651] [P22301]
  • Domain organization of [I10R1_HUMAN] [IL10_HUMAN] by SWISSPFAM
  • Domain found in 1J7V: [IL10 ] by SMART
  • Other resources with information on 1J7V
  • Community annotation for 1J7V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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