1J8C Structural Genomics date May 21, 2001
title Solution Structure Of The Ubiquitin-Like Domain Of Hplic-2
authors K.J.Walters, M.F.Kleijnen, A.M.Goh, G.Wagner, P.M.Howley
compound source
Molecule: Ubiquitin-Like Protein Hplic-2
Chain: A
Fragment: N-Terminal Domain (Residues 1-103)
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
methodSolution NMR
related structures by homologous chain: 1YQB
Primary referenceStructural studies of the interaction between ubiquitin family proteins and proteasome subunit S5a., Walters KJ, Kleijnen MF, Goh AM, Wagner G, Howley PM, Biochemistry 2002 Feb 12;41(6):1767-77. PMID:11827521
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (541 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1J8C
  • Original NMR restraints for 1J8C from PDB
  • Retrieve 1J8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J8C from S2C, [Save to disk]
  • View 1J8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J8C
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1J8C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j8ca_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1j8c from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j8c_A] [1j8c]
  • SWISS-PROT database: [Q9UHD9]
  • Domain organization of [UBQL2_HUMAN] by SWISSPFAM
  • Domain found in 1J8C: [UBQ ] by SMART
  • Other resources with information on 1J8C
  • Community annotation for 1J8C at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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