1J8I Cytokine date May 21, 2001
title Solution Structure Of Human Lymphotactin
authors E.S.Kuloglu, D.R.Mccaslin, J.L.Markley, C.D.Pauza, B.F.Volkman
compound source
Molecule: Lymphotactin
Chain: A
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
methodSolution NMR
related structures by homologous chain: 1J9O
Gene
Ontology
ChainFunctionProcessComponent
A
  • chemokine receptor binding
  • negative regulation of inter...

    • Primary referenceMonomeric solution structure of the prototypical 'C' chemokine lymphotactin., Kuloglu ES, McCaslin DR, Kitabwalla M, Pauza CD, Markley JL, Volkman BF, Biochemistry 2001 Oct 23;40(42):12486-96. PMID:11601972
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (493 Kb) [Save to disk]
  • Biological Unit Coordinates (1j8i.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1J8I
  • Original NMR restraints for 1J8I from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1J8I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J8I from S2C, [Save to disk]
    • View 1J8I in 3D
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    • Visual 3D analysis of 1J8I
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J8I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j8ia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j8i_A] [1j8i]
  • SWISS-PROT database: [P47992]
  • Domain organization of [XCL1_HUMAN] by SWISSPFAM
  • Domain found in 1J8I: [SCY ] by SMART
    • Other resources with information on 1J8I
  • Community annotation for 1J8I at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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