1JA1 Oxidoreductase date May 29, 2001
title Cypor-Triple Mutant
authors P.A.Hubbard, A.L.Shen, R.Paschke, C.B.Kasper, J.J.Kim
compound source
Molecule: Nadph-Cytochrome P450 Reductase
Chain: A, B
Synonym: Nadph-Cytochrome P450 Oxidoreductase
Ec: 1.6.2.4
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Gene: Cypor
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C1a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Por263
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.437 115.159 118.547 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand EPE, FAD, FMN, NAP BindingDB enzyme Oxidoreductase E.C.1.6.2.4 BRENDA
related structures by homologous chain: 1B1C
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceNADPH-cytochrome P450 oxidoreductase. Structural basis for hydride and electron transfer., Hubbard PA, Shen AL, Paschke R, Kasper CB, Kim JJ, J Biol Chem 2001 Aug 3;276(31):29163-70. PMID:11371558
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (1ja1.pdb1.gz) 115 Kb
  • Biological Unit Coordinates (1ja1.pdb2.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 1JA1
  • CSU: Contacts of Structural Units for 1JA1
  • Likely Quarternary Molecular Structure file(s) for 1JA1
  • Structure Factors (1145 Kb)
  • Retrieve 1JA1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JA1 from S2C, [Save to disk]
  • Re-refined 1ja1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JA1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JA1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JA1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1o1ja1, region A:1-142 [Jmol] [rasmolscript] [script source]
        - Domain d1a1ja1, region A:103-131 [Jmol] [rasmolscript] [script source]
        - Domain d1u1ja1, region A:2-395 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1a1, region A:240-518 [Jmol] [rasmolscript] [script source]
        - Domain d1w1ja1, region A:274-560 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1a3, region A:519-678 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1a2, region A:63-239 [Jmol] [rasmolscript] [script source]
        - Domain d1p1ja1, region A:9-322,A:438-533 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1b1, region B:240-518 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1b3, region B:519-678 [Jmol] [rasmolscript] [script source]
        - Domain d1ja1b2, region B:65-239 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ja1_A] [1ja1] [1ja1_B]
  • SWISS-PROT database: [P00388]
  • Domain organization of [NCPR_RAT] by SWISSPFAM
  • Other resources with information on 1JA1
  • Community annotation for 1JA1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science