1JA8 Oxidoreductase date May 29, 2001
title Kinetic Analysis Of Product Inhibition In Human Manganese Su Dismutase
authors A.S.Hearn, M.E.Stroupe, D.E.Cabelli, J.R.Lepock, J.A.Tainer, H.S. D.S.Silverman
compound source
Molecule: Manganese Superoxide Dismutase
Chain: A, B
Synonym: Superoxide Dismutase [Mn], Mitochondrial
Ec: 1.15.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phmnsdo4
symmetry Space Group: P 61 2 2
R_factor 0.243 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.608 79.608 240.101 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.12 Å
ligand MN, SO4 enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1EM1, 1SZX
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceKinetic analysis of product inhibition in human manganese superoxide dismutase., Hearn AS, Stroupe ME, Cabelli DE, Lepock JR, Tainer JA, Nick HS, Silverman DN, Biochemistry 2001 Oct 9;40(40):12051-8. PMID:11580280
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1ja8.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 1JA8
  • CSU: Contacts of Structural Units for 1JA8
  • Likely Quarternary Molecular Structure file(s) for 1JA8
  • Retrieve 1JA8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JA8 from S2C, [Save to disk]
  • View 1JA8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JA8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JA8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ja8a1, region A:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1ja8a2, region A:84-198 [Jmol] [rasmolscript] [script source]
        - Domain d1ja8b1, region B:1-83 [Jmol] [rasmolscript] [script source]
        - Domain d1ja8b2, region B:84-198 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ja8_B] [1ja8_A] [1ja8]
  • SWISS-PROT database: [P04179]
  • Domain organization of [SODM_HUMAN] by SWISSPFAM
  • Other resources with information on 1JA8
  • Community annotation for 1JA8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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