1JAP Complex (Metalloprotease Inhibitor) date Mar 11, 1996
title Complex Of Pro-Leu-Gly-Hydroxylamine With The Catalytic Domain Of Matrix Metallo Proteinase-8 (Met80 Form)
authors W.Bode, P.Reinemer, R.Huber, T.Kleine, S.Schnierer, H.Tschesche
compound source
Molecule: Matrix Metallo Proteinase-8 (Met80 Form)
Chain: A
Fragment: Catalytic Domain, Residues 86 - 242
Synonym: Mmp-8-Phe79 Form
Ec: 3.4.24.34
Engineered: Yes
Other_details: Mmp-8 Is Identical To The Human Neutrophil Collagenase;
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: Neutrophils
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Pro-Leu-Gly-Hydroxylamine
Chain: I
Engineered: Yes

symmetry Space Group: P 21 21 21
R_factor 0.194 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.090 69.370 72.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand CA, HOA, ZN enzyme Hydrolase E.C.3.4.24.34 BRENDA
related structures by homologous chain: 1CGE, 1KBC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe X-ray crystal structure of the catalytic domain of human neutrophil collagenase inhibited by a substrate analogue reveals the essentials for catalysis and specificity., Bode W, Reinemer P, Huber R, Kleine T, Schnierer S, Tschesche H, EMBO J 1994 Mar 15;13(6):1263-9. PMID:8137810
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1jap.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1JAP
  • CSU: Contacts of Structural Units for 1JAP
  • Likely Quarternary Molecular Structure file(s) for 1JAP
  • Retrieve 1JAP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JAP from S2C, [Save to disk]
  • View 1JAP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JAP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JAP, from MSDmotif at EBI
  • Genome occurence of 1JAP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1japa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jap_A] [1jap] [1jap_I]
  • SWISS-PROT database: [P22894]
  • Domain organization of [MMP8_HUMAN] by SWISSPFAM
  • Domain found in 1JAP: [ZnMc ] by SMART
  • Other resources with information on 1JAP
  • Community annotation for 1JAP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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