1JBI Structural Genomics, Unknown Function date Jun 05, 2001
title Nmr Structure Of The Lccl Domain
authors E.Liepinsh, M.Trexler, A.Kaikkonen, J.Weigelt, L.Banyai, L.Patthy, G.Otting
compound source
Molecule: Cochlin
Chain: A
Fragment: Lccl Module
Synonym: Coch-5b2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: M13mp18
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm 109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmed23
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure of the LCCL domain and implications for DFNA9 deafness disorder., Liepinsh E, Trexler M, Kaikkonen A, Weigelt J, Banyai L, Patthy L, Otting G, EMBO J 2001 Oct 1;20(19):5347-53. PMID:11574466
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (494 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1JBI
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JBI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JBI from S2C, [Save to disk]
  • View 1JBI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JBI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JBI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jbia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jbi from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jbi] [1jbi_A]
  • SWISS-PROT database: [O43405]
  • Domain organization of [COCH_HUMAN] by SWISSPFAM
  • Domain found in 1JBI: [LCCL ] by SMART
  • Other resources with information on 1JBI
  • Community annotation for 1JBI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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