1JBZ Luminescent Protein date Jun 07, 2001
title Crystal Structure Analysis Of A Dual-Wavelength Emission Green Fluorescent Protein Variant At High Ph
authors G.T.Hanson, T.B.Mcananey, E.S.Park, M.E.P.Rendell, D.K.Yarbrough, S.Chu, L.Xi, S.G.Boxer, M.H.Montrose, S.J.Remington
compound source
Molecule: Green Fluorescent Protein
Chain: A
Synonym: Dual Emission Green Fluorescent Protein, Degfp1
Engineered: Yes
Mutation: Yes
Organism_scientific: Aequorea Victoria
Organism_taxid: 6100
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prsetb
symmetry Space Group: P 21 21 21
R_factor 0.177 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.200 62.374 68.967 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand CRO, EDO, MG enzyme
related structures by homologous chain: 1H6R, 1Z1Q
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGreen fluorescent protein variants as ratiometric dual emission pH sensors. 1. Structural characterization and preliminary application., Hanson GT, McAnaney TB, Park ES, Rendell ME, Yarbrough DK, Chu S, Xi L, Boxer SG, Montrose MH, Remington SJ, Biochemistry 2002 Dec 31;41(52):15477-88. PMID:12501176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1jbz.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1JBZ
  • CSU: Contacts of Structural Units for 1JBZ
  • Likely Quarternary Molecular Structure file(s) for 1JBZ
  • Structure Factors (239 Kb)
  • Retrieve 1JBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JBZ from S2C, [Save to disk]
  • Re-refined 1jbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JBZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JBZ from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JBZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jbza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jbz from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jbz_A] [1jbz]
  • SWISS-PROT database: [P42212]
  • Domain organization of [GFP_AEQVI] by SWISSPFAM
  • Other resources with information on 1JBZ
  • Community annotation for 1JBZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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