1JDH Transcription date Jun 13, 2001
title Crystal Structure Of Beta-Catenin And Htcf-4
authors T.A.Graham, D.M.Ferkey, F.Mao, D.Kimelman, W.Xu
compound source
Molecule: Beta-Catenin
Chain: A
Fragment: Residues 135-663
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Htcf-4
Chain: B
Fragment: Residues 12-49
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.203 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.770 76.033 159.129 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
note 1JDH is a representative structure
related structures by homologous chain: 1G3J, 1I7W
Primary referenceTcf4 can specifically recognize beta-catenin using alternative conformations., Graham TA, Ferkey DM, Mao F, Kimelman D, Xu W, Nat Struct Biol 2001 Dec;8(12):1048-52. PMID:11713475
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdh.pdb1.gz) 89 Kb
  • CSU: Contacts of Structural Units for 1JDH
  • Likely Quarternary Molecular Structure file(s) for 1JDH
  • Retrieve 1JDH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDH from S2C, [Save to disk]
  • View 1JDH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JDH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JDH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jdhb_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1jdh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdh_B] [1jdh] [1jdh_A]
  • SWISS-PROT database: [P35222] [Q9NQB0]
  • Domain organization of [CTNB1_HUMAN] [TF7L2_HUMAN] by SWISSPFAM
  • Domain found in 1JDH: [ARM ] by SMART
  • Other resources with information on 1JDH
  • Community annotation for 1JDH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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