1JDW Transferase date Jan 22, 1997
title Crystal Structure And Mechanism Of L-Arginine: Glycine Amidinotransferase: A Mitochondrial Enzyme Involved In Creatine Biosynthesis
authors A.Humm, E.Fritsche, S.Steinbacher, R.Huber
compound source
Molecule: L-Arginine\:Glycine Amidinotransferase
Chain: A
Fragment: Residues 64 - 423
Synonym: Transamidinase, At38
Ec: 2.1.4.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell_line: Bl21
Organ: Kidney
Organelle: Mitochondria
Cellular_location: Intermembrane Space Of Mitochondria And Cytoplasm;
Gene: At38h
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_cellular_location: Cytosolic
Expression_system_vector_type: Pbluescript Derivative With T7 Expression Elements;
Expression_system_vector: Prset
Expression_system_plasmid: Prsetat38h
Expression_system_gene: At38h
Other_details: Without Signal Sequence (1-37) But With N- Terminal Attached 6-Histidine-Tag (14 Residues)
symmetry Space Group: P 43 21 2
R_factor 0.196 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.600 83.600 200.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BME enzyme Transferase E.C.2.1.4.1 BRENDA
related structures by homologous chain: 2JDW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and mechanism of human L-arginine:glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis., Humm A, Fritsche E, Steinbacher S, Huber R, EMBO J 1997 Jun;16(12):3373-85. PMID:9218780
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (1jdw.pdb1.gz) 164 Kb
  • LPC: Ligand-Protein Contacts for 1JDW
  • CSU: Contacts of Structural Units for 1JDW
  • Likely Quarternary Molecular Structure file(s) for 1JDW
  • Retrieve 1JDW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JDW from S2C, [Save to disk]
  • View 1JDW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JDW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JDW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jdw__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jdw_A] [1jdw]
  • SWISS-PROT database: [P50440]
  • Domain organization of [GATM_HUMAN] by SWISSPFAM
  • Other resources with information on 1JDW
  • Community annotation for 1JDW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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