1JE4 Antiviral Protein date Jun 15, 2001
title Solution Structure Of The Monomeric Variant Of The Chemokine Mip-1beta
authors S.Kim, S.Jao, J.S.Laurence, P.J.Liwang
compound source
Molecule: Macrophage Inflammatory Protein 1-Beta
Chain: A
Synonym: Mip-1beta, T-Cell Activation Protein 2, Act-2, Lymphocyte Activation Gene-1 Protein, Lag-1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32
methodSolution NMR
related structures by homologous chain: 1B53, 1HUN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural comparison of monomeric variants of the chemokine MIP-1beta having differing ability to bind the receptor CCR5., Kim S, Jao S, Laurence JS, LiWang PJ, Biochemistry 2001 Sep 11;40(36):10782-91. PMID:11535053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1JE4
  • Original NMR restraints for 1JE4 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JE4 from S2C, [Save to disk]
  • View 1JE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JE4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1je4a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1je4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1je4_A] [1je4]
  • SWISS-PROT database: [P13236]
  • Domain organization of [CCL4_HUMAN] by SWISSPFAM
  • Domain found in 1JE4: [SCY ] by SMART
  • Other resources with information on 1JE4
  • Community annotation for 1JE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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