1JEB	Oxygen Storage Transport	date	Jun 17, 2001
title	Chimeric Humanmouse Carbonmonoxy Hemoglobin (Human Zeta2 Beta2)
authors	R.D.Kidd, J.E.Russell, N.J.Watmough, E.N.Baker, T.Brittain
compound		source
Molecule: Hemoglobin Zeta Chain Chain: A, C Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hbz Expression_system: Mus Musculus Expression_system_common: House Mouse Expression_system_taxid: 10090 Expression_system_strain: Balbc Other_details: Transgenic-Knockout Mouse Expressing Chimeri Zeta Mouse Beta-Single Hemoglobin;
Molecule: Hemoglobin Beta-Single Chain Chain: B, D Synonym: B Single		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Transgenic-Knockout Mouse Expressing Chimeri Zeta Mouse Beta-Single Hemoglobin
symmetry	Space Group: P 41	R_factor 0.216 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.921 84.921 104.523 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ACE, CMO, HEM	enzyme
related structures	by homologous chain: 1HGB, 1HHO, 1O1K
Gene Ontology	Chain Function Process Component A, C peroxidase activity D, B peroxidase activity
Primary reference	The role of beta chains in the control of the hemoglobin oxygen binding function: chimeric human/mouse proteins, structure, and function., Kidd RD, Russell JE, Watmough NJ, Baker EN, Brittain T, Biochemistry 2001 Dec 25;40(51):15669-75. PMID:11747442

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk] Biological Unit Coordinates (1jeb.pdb1.gz) 95 Kb LPC: Ligand-Protein Contacts for 1JEB CSU: Contacts of Structural Units for 1JEB Likely Quarternary Molecular Structure file(s) for 1JEB Structure Factors (367 Kb) Retrieve 1JEB in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JEB from S2C, [Save to disk] Re-refined 1jeb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JEB in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JEB

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JEB, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jeba_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jebb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1jebc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1jebd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jeb_A] [1jeb] [1jeb_D] [1jeb_B] [1jeb_C] SWISS-PROT database: [P02008] [P02088] Domain organization of [HBAZ_HUMAN] [HBB1_MOUSE] by SWISSPFAM

Other resources with information on 1JEB

Community annotation for 1JEB at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---