1JEB Oxygen Storage Transport date Jun 17, 2001
title Chimeric Humanmouse Carbonmonoxy Hemoglobin (Human Zeta2 Mouse Beta2)
authors R.D.Kidd, J.E.Russell, N.J.Watmough, E.N.Baker, T.Brittain
compound source
Molecule: Hemoglobin Zeta Chain
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hbz
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_strain: Balbc
Other_details: Transgenic-Knockout Mouse Expressing Chimeric Human Zeta Mouse Beta-Single Hemoglobin;

Molecule: Hemoglobin Beta-Single Chain
Chain: B, D
Synonym: B Single

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Other_details: Transgenic-Knockout Mouse Expressing Chimeric Human Zeta Mouse Beta-Single Hemoglobin
symmetry Space Group: P 41
R_factor 0.216 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.921 84.921 104.523 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand ACE, CMO, HEM enzyme
related structures by homologous chain: 1HGB, 1HHO, 1O1K
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceThe role of beta chains in the control of the hemoglobin oxygen binding function: chimeric human/mouse proteins, structure, and function., Kidd RD, Russell JE, Watmough NJ, Baker EN, Brittain T, Biochemistry 2001 Dec 25;40(51):15669-75. PMID:11747442
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1jeb.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 1JEB
  • CSU: Contacts of Structural Units for 1JEB
  • Likely Quarternary Molecular Structure file(s) for 1JEB
  • Structure Factors (367 Kb)
  • Retrieve 1JEB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JEB from S2C, [Save to disk]
  • Re-refined 1jeb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JEB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JEB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JEB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jeba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jebb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jebc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jebd_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1jeb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jeb_A] [1jeb] [1jeb_D] [1jeb_B] [1jeb_C]
  • SWISS-PROT database: [P02008] [P02088]
  • Domain organization of [HBAZ_HUMAN] [HBB1_MOUSE] by SWISSPFAM
  • Other resources with information on 1JEB
  • Community annotation for 1JEB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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