1JEI Membrane Protein date Jun 18, 2001
title Lem Domain Of Human Inner Nuclear Membrane Protein Emerin
authors N.Wolff, B.Gilquin, K.Courchay, I.Callebaut, S.Zinn-Justin
compound source
Molecule: Emerin
Chain: A
Fragment: Lem Domain (Residues 2-54)
Engineered: Yes
Synthetic: Yes
Other_details: Chemical Synthesis
methodSolution NMR
note 1JEI is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural analysis of emerin, an inner nuclear membrane protein mutated in X-linked Emery-Dreifuss muscular dystrophy., Wolff N, Gilquin B, Courchay K, Callebaut I, Worman HJ, Zinn-Justin S, FEBS Lett 2001 Jul 20;501(2-3):171-6. PMID:11470279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1JEI
  • Original NMR restraints for 1JEI from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JEI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JEI from S2C, [Save to disk]
  • View 1JEI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JEI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JEI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jeia_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jei from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jei] [1jei_A]
  • SWISS-PROT database: [P50402]
  • Domain organization of [EMD_HUMAN] by SWISSPFAM
  • Domain found in 1JEI: [LEM ] by SMART
  • Other resources with information on 1JEI
  • Community annotation for 1JEI at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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