OCA Atlas for 1JEW

1JEW

Virus Receptor

date

Jun 19, 2001

title

Cryo-Em Structure Of Coxsackievirus B3(M Strain) With Its Ce Receptor, Coxsackievirus And Adenovirus Receptor (Car).

authors

M.G.Rossmann, Y.He

compound

source

Molecule: Coxsackievirus And Adenovirus Receptor
Chain: R
Fragment: Residues 21-140
Synonym: Coxsackievirus B-Adenovirus Receptor, Hcar, Cvb3 B Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Car
Expression_system: Mus Musculus
Expression_system_common: House Mouse
Expression_system_taxid: 10090
Expression_system_cell_line: A9 Cells

Molecule: Coxsackievirus Capsid, Coat Protein Vp1
Chain: 1
Fragment: Residues 571-851
Synonym: P1d
Engineered: Yes

Organism_scientific: Coxsackievirus B3 (Strain Woodruff)
Organism_taxid: 103904
Strain: Woodruff
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hela Cells
Other_details: Coxsackievirus B3

Molecule: Coxsackievirus Capsid, Coat Protein Vp2
Chain: 2
Fragment: Residues 70-332
Synonym: P1b
Engineered: Yes

Molecule: Coxsackievirus Capsid, Coat Protein Vp3
Chain: 3
Fragment: Residues 333-570
Synonym: P1c
Engineered: Yes

Molecule: Coxsackievirus Capsid, Coat Protein Vp4
Chain: 4
Fragment: Residues 2-69
Synonym: P1a
Engineered: Yes

symmetry

Space Group: P 1

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
1.000	1.000	1.000	90.00	90.00	90.00

method

Electron Microscopy

resolution

22.00 Å

related structures

by homologous chain: 1OOP, 1RHI, 1RSF

Gene
Ontology

Chain	Function	Process	Component
1, 3, 2
4

Primary reference

Interaction of coxsackievirus B3 with the full length coxsackievirus-adenovirus receptor., He Y, Chipman PR, Howitt J, Bator CM, Whitt MA, Baker TS, Kuhn RJ, Anderson CW, Freimuth P, Rossmann MG, Nat Struct Biol 2001 Oct;8(10):874-8. PMID:11573093

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]

Biological Unit Coordinates (1jew.pdb1.gz) 993 Kb

CSU: Contacts of Structural Units for 1JEW

Likely Quarternary Molecular Structure file(s) for 1JEW

Retrieve 1JEW in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1JEW from S2C, [Save to disk]

View 1JEW in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JEW

VIPERdb: visual, structural and computational analysis of 1JEW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1JEW, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1jew1_, region 1 [Jmol] [rasmolscript] [script source]
- Domain d1jew2_, region 2 [Jmol] [rasmolscript] [script source]
- Domain d1jew3_, region 3 [Jmol] [rasmolscript] [script source]
- Domain d1jew4_, region 4 [Jmol] [rasmolscript] [script source]
- Domain d1jewr_, region R [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jew_1] [1jew_2] [1jew_4] [1jew] [1jew_R] [1jew_3]

SWISS-PROT database: [P78310] [Q66282]

Domain organization of [CXAR_HUMAN] [POLG_CXB3W] by SWISSPFAM

Domain found in 1JEW: [IG ] by SMART

Other resources with information on 1JEW

Community annotation for 1JEW at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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