1JFB Oxidoreductase date Jun 20, 2001
title X-Ray Structure Of Nitric Oxide Reductase (Cytochrome P450no Ferric Resting State At Atomic Resolution
authors H.Shimizu, S.Adachi, S.Y.Park, Y.Shiro, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Nitric-Oxide Reductase Cytochrome P450 55a1
Chain: A
Ec: 1.7.99.7
Engineered: Yes
Organism_scientific: Fusarium Oxysporum
Organism_taxid: 5507
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Prset-C
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.661 82.132 85.843 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.00 Å
ligand GOL, HEM enzyme Oxidoreductase E.C.1.7.99.7 BRENDA
note 1JFB is a representative structure
related structures by homologous chain: 1JFC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray structure of nitric oxide reductase (cytochrome P450nor) at atomic resolution., Shimizu H, Park SY, Shiro Y, Adachi S, Acta Crystallogr D Biol Crystallogr 2002 Jan;58(Pt 1):81-9. PMID:11752781
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (246 Kb) [Save to disk]
  • Biological Unit Coordinates (1jfb.pdb1.gz) 241 Kb
  • LPC: Ligand-Protein Contacts for 1JFB
  • CSU: Contacts of Structural Units for 1JFB
  • Likely Quarternary Molecular Structure file(s) for 1JFB
  • Retrieve 1JFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JFB from S2C, [Save to disk]
  • View 1JFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JFB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1JFB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JFB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jfba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jfb] [1jfb_A]
  • SWISS-PROT database: [P23295]
  • Domain organization of [NOR_FUSOX] by SWISSPFAM
  • Other resources with information on 1JFB
  • Community annotation for 1JFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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