1JFN Lipid Transport date Jun 21, 2001
title Solution Structure Of Human Apolipoprotein(A) Kringle Iv Typ
authors B.Maderegger, W.Bermel, A.Hrzenjak, G.M.Kostner, H.Sterk
compound source
Molecule: Apolipoprotein A, Kiv-T6
Chain: A
Fragment: Apo(A) Kiv-T6
Synonym: Apo(A) Kiv-T6; Lipoprotein, Lp(A); Apolipoprotein Apo(A); Lp(A);
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Apoa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
methodSolution NMR
related structures by homologous chain: 1PMK
Primary referenceSolution structure of human apolipoprotein(a) kringle IV type 6., Maderegger B, Bermel W, Hrzenjak A, Kostner GM, Sterk H, Biochemistry 2002 Jan 15;41(2):660-8. PMID:11781107
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (456 Kb) [Save to disk]
  • Biological Unit Coordinates (1jfn.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1JFN
  • Original NMR restraints for 1JFN from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1JFN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JFN from S2C, [Save to disk]
    • View 1JFN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JFN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JFN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jfna_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jfn_A] [1jfn]
  • SWISS-PROT database: [P08519]
  • Domain organization of [APOA_HUMAN] by SWISSPFAM
  • Domain found in 1JFN: [KR ] by SMART
    • Other resources with information on 1JFN
  • Community annotation for 1JFN at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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