1JGG Transcription Dna date Jun 25, 2001
title Even-Skipped Homeodomain Complexed To At-Rich Dna
authors J.A.Hirsch, A.K.Aggarwal
compound source
Molecule: 5'-D(Ptpapaptptpgpapaptpt)-3'
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Papaptptpcpapaptptpa)-3'
Chain: D
Engineered: Yes

Synthetic: Yes

Molecule: Segmentation Protein Even-Skipped
Chain: A, B
Fragment: Homeodomain
Engineered: Yes

Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-3a
symmetry Space Group: P 1 21 1
R_factor 0.229 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.060 61.610 39.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the even-skipped homeodomain complexed to AT-rich DNA: new perspectives on homeodomain specificity., Hirsch JA, Aggarwal AK, EMBO J 1995 Dec 15;14(24):6280-91. PMID:8557047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1jgg.pdb1.gz) 31 Kb
  • CSU: Contacts of Structural Units for 1JGG
  • Likely Quarternary Molecular Structure file(s) for 1JGG
  • Retrieve 1JGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JGG from S2C, [Save to disk]
  • View 1JGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JGG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JGG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jgga_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jggb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jgg_B] [1jgg_A] [1jgg_C] [1jgg] [1jgg_D]
  • SWISS-PROT database: [P06602]
  • Domain organization of [EVE_DROME] by SWISSPFAM
  • Domain found in 1JGG: [HOX ] by SMART
  • Other resources with information on 1JGG
  • Community annotation for 1JGG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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