1JIR Hydrolase date Jul 02, 2001
title Crystal Structure Of Trypsin Complex With Amylamine In Cyclo
authors G.Wu, G.Zhu, Q.Huang, M.Qian, Y.Tang
compound source
Molecule: Beta-Trypsin
Chain: A
Synonym: Trypsinogen, Cationic
Ec: 3.4.21.4
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.700 63.500 69.070 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AML, CA, SO4 enzyme Hydrolase E.C.3.4.21.4 BRENDA
related structures by homologous chain: 1J15, 1K1N
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1jir.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1JIR
  • CSU: Contacts of Structural Units for 1JIR
  • Likely Quarternary Molecular Structure file(s) for 1JIR
  • Structure Factors (120 Kb)
  • Retrieve 1JIR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JIR from S2C, [Save to disk]
  • Re-refined 1jir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JIR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JIR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1JIR, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jira_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1jir from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jir_A] [1jir]
  • SWISS-PROT database: [P00760]
  • Domain organization of [TRY1_BOVIN] by SWISSPFAM
  • Domain found in 1JIR: [Tryp_SPc ] by SMART
  • Other resources with information on 1JIR
  • Community annotation for 1JIR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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